Dear Jeannette ,


Check out our latest WCMC Newsletter!


- WCMC Outreach Core

UC Davis
West Coast Metabolomics Center

Letter from the Director

Dear fellow scientists,


We hope you can look back to the year 2022 with satisfaction and success! At the UC Davis West Coast Metabolomics Center, we were happy to have welcomed 8 female speakers to our 10 invited seminar lectures, showcasing the leadership of women in metabolomics. See below for details and visit our YouTube channel for webinars you had missed!


In 2022, we trained 349 participants in our suite of metabolomics courses, from the 'Bits & Bites' hands-on web-based training units to the in-depth 1-week and 2-week courses. We are extending these courses for this year with new units, including training on ‘mass spectrometry imaging’ and a unit on ‘metabolomics for epidemiologists’ while keeping the popular sessions on MetaboAnalyst and GNPS. Check out our course contents!


Our Center's research activities in compound identification had a focus on predicting mass spectra using quantum chemistry molecular dynamics, with three papers on this topic (PMIDs 35006668, 35050190, 36107950). We also benchmarked CFM-ID performance, validated the use of plasma separator cards against the use of dried bloodspots in lipidomics, and revealed the mechanisms of metabolic changes in lungs that contribute to asthmatic phenotypes (PMIDs 36043939, 36316462, 36331340). We established a new MS/MS resource of almost 11,000 accurate mass spectra of acyl-CoA intermediates and found that p73α1 inhibits cancer cell viability through direct transcriptional suppression of stearoyl-CoA desaturase-1 (PMIDs 36010592, 35119811). Furthermore, we led or contributed to research for 25 additional papers. Congratulations to all authors for 2022! We are also grateful to receive an NIH R03 award to integrate metagenomics data into accurate mass metabolite identifications in stool, and to participate in a recent Keck foundation grant awarded to Prof. David Olson at UC Davis on research on psychedelic endorphins. At several conferences, we highlighted our research on microbial metabolism as well as the use of our new LC-BinBase automatic data processing system. These methods were crucial to perform large-scale human cohort studies for three cohorts, the Longevity Consortium cohorts, the T1D cohorts, and the Acute-to-Chronic Pain cohorts. All human cohort studies were performed in our ThermoFisher Center of Excellence in Clinical Metabolomics on the UC Davis Sacramento campus.


Contact us! We look forward to working with you in 2023.


With best wishes for the New Year,

Oliver Fiehn, PhD

Director WCMC

Introducing our Technical Director

We are happy to welcome Dr. Uri Keshet as the new director for our fee-for-service core! Dr. Keshet has immense expertise in mass spectrometry and metabolomics, and superb communication skills. He is devoted to accelerating the turnaround of metabolomics projects through faster data acquisitions and by validating the new LC-BinBase system. The service core utilization has sharply increased over the last year to more than 400 studies covering over 40,000 samples. Our suite of Agilent, Sciex, ThermoFisher, and Leco mass spectrometers will continue to be used for a wide variety of robust LC- and GC-based metabolomics studies.

Bits & Bites 2023: Short Course Series (Online)

Fundamentals of Lipidomics with Dr. Tong Shen - UC Davis on Jan 27, 2023


Back by popular demand, the first Bits & Bites this year is great for anyone who wants to gain a deeper insight into lipidomics!

This year we have 9 short courses that will feature in-depth topics in untargeted metabolomics so that participants can gain a deeper insight into current technologies, methods, and software. Not only do we have many courses returning back by popular demand, but we have 2 new courses, Imaging Mass Spectrometry 101: Sample Preparation and Metabolomics for Epidemiologists!

More Info!
Register Here!
Pay Here!

Hands-on LC-MS Data Processing and Statistics 2023 (Online)

Date: March 20 - 24, 2023

Virtual Instructor-Led Course (Online)


This 1-week course will feature hands-on training with real-world untargeted metabolomics data covering LC-MS data processing, compound identification, statistical analysis, network mapping, & data interpretation, including:


  • Untargeted data processing and exercises on MS-DIAL.
  • Exercises in the identification of unknowns by cheminformatics software workflows
  • Data normalization and transformation with and without internal standards and quality controls
  • Multivariate and univariate statistics 
  • Pathway mapping and enrichment analysis
More Info!
Register Here!
Pay Here!
If you have any questions feel free to contact us!
Email: Jeannette Martins jmartins@ucdavis.edu
Register

You can revisit any online lectures from our past speakers on the WCMC YouTube Channel.

Fresh off the press

Join us on LinkedIn!

Get the latest on WCMC-related announcements, job posts, events, and so much more on our new LinkedIn page: https://www.linkedin.com/company/uc-davis-west-coast-metabolomics-center/

UC Davis West Coast Metabolomics Center

451 Health Sciences Dr. Rm 1313

Davis, CA 95616

Phone: (530) 752-8129


If you have any questions contact us: wcmetabolomics@gmail.com

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